phamerate

Program to group related gene products into phamilies using either MMseqs2 for both similarity search and clustering, or blastp for similarity search and mcl for clustering.

pdm_utils.pipelines.phamerate.main(argument_list)

pdm_utils.pipelines.phamerate.refresh_tempdir(tmpdir)

Recursively deletes tmpdir if it exists, otherwise makes it :param tmpdir: directory to refresh :return:

pdm_utils.pipelines.phamerate.setup_argparser()

Builds argparse.ArgumentParser for this script :return: